mcp-opentargets

Open Targets disease/target/drug knowledge graph (GraphQL)

Part of Pipeworx — an MCP gateway connecting AI agents to 250+ live data sources.

Tools

Tool	Description
`target`	Target (gene) profile by Ensembl id.
`disease`	Disease profile by EFO id.
`drug`	Drug profile by ChEMBL id.
`search`	Platform search across diseases/targets/drugs.
`target_associations`	Top disease associations for a target.
`disease_associations`	Top target associations for a disease.
`target_known_drugs`	Drugs clinically tested against a target.

Add to your MCP client (Claude Desktop, Cursor, Windsurf, etc.):

{
  "mcpServers": {
    "opentargets": {
      "url": "https://gateway.pipeworx.io/opentargets/mcp"
    }
  }
}

Or connect to the full Pipeworx gateway for access to all 250+ data sources:

{
  "mcpServers": {
    "pipeworx": {
      "url": "https://gateway.pipeworx.io/mcp"
    }
  }
}

Instead of calling tools directly, you can ask questions in plain English:

ask_pipeworx({ question: "your question about Opentargets data" })

The gateway picks the right tool and fills the arguments automatically.

MIT